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BSgenome.Hsapiens.UCSC.hg38
This is the development version of BSgenome.Hsapiens.UCSC.hg38; for the stable release version, see BSgenome.Hsapiens.UCSC.hg38.
Full genomic sequences for Homo sapiens (UCSC genome hg38)
Bioconductor version: Development (3.23)
Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023年01月31日). The sequences are stored in DNAString objects.
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("BSgenome.Hsapiens.UCSC.hg38")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual
PDF
Details
Version
1.4.5
License
Artistic-2.0
Depends
R (>= 4.2.0), GenomeInfoDb(>= 1.34.9), BSgenome(>= 1.66.2)
Imports
System Requirements
See More
Suggests
Linking To
Enhances
Depends On Me
BSgenome.Hsapiens.UCSC.hg38.masked
Imports Me
cfDNAPro, epiregulon, katdetectr, methodical, musicatk, ORFhunteR, primirTSS, TENET, revert, SATS
Suggests Me
BSgenome, bsseq, BUSpaRse, ChIPpeakAnno, circRNAprofiler, CleanUpRNAseq, CNEr, crisprBowtie, crisprBwa, crisprDesign, CRISPRseek, crisprViz, DegCre, DMRcaller, eisaR, enhancerHomologSearch, EpiCompare, EpiTxDb, GenomicRanges, GenomicScores, GRaNIE, GUIDEseq, HiCDCPlus, MethReg, MethylSeekR, MIRit, Motif2Site, MotifPeeker, multicrispr, nullranges, periodicDNA, pqsfinder, REMP, scanMiRApp, SCOPE, Seqinfo, signeR, supersigs, TAPseq, transmogR, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, GencoDymo2, gwas2crispr, ICAMS
Links To Me
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz
Windows Binary (x86_64)
Package Short Url
https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/
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