tweeDEseq

This is the development version of tweeDEseq; for the stable release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions

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DOI: 10.18129/B9.bioc.tweeDEseq

Bioconductor version: Development (3.23)

Differential expression analysis of RNA-seq using the Poisson-Tweedie (PT) family of distributions. PT distributions are described by a mean, a dispersion and a shape parameter and include Poisson and NB distributions, among others, as particular cases. An important feature of this family is that, while the Negative Binomial (NB) distribution only allows a quadratic mean-variance relationship, the PT distributions generalizes this relationship to any orde.

Author: Dolors Pelegri-Siso [aut, cre] ORCID iD ORCID: 0000-0002-5993-3003 , Juan R. Gonzalez [aut] ORCID iD ORCID: 0000-0003-3267-2146 , Mikel Esnaola [aut], Robert Castelo [aut]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.