tracktables

This is the development version of tracktables; for the stable release version, see tracktables.

Build IGV tracks and HTML reports

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DOI: 10.18129/B9.bioc.tracktables

Bioconductor version: Development (3.23)

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")

Creating IGV HTML reports with tracktables PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ReportWriting, Sequencing, Software

Version 1.45.0

In Bioconductor since BioC 3.0 (R-3.1) (11 years)

License GPL (>= 3)

Depends R (>= 3.5.0)

Imports IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods

System Requirements

URL

Suggests knitr, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tracktables_1.45.0.tar.gz

Windows Binary (x86_64) tracktables_1.45.0.zip

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/tracktables

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tracktables

Bioc Package Browser https://code.bioconductor.org/browse/tracktables/

Package Short Url https://bioconductor.org/packages/tracktables/

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