tRNAscanImport

This is the development version of tRNAscanImport; for the stable release version, see tRNAscanImport.

Importing a tRNAscan-SE result file as GRanges object

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DOI: 10.18129/B9.bioc.tRNAscanImport

Bioconductor version: Development (3.23)

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix G.M. Ernst [aut, cre] ORCID iD ORCID: 0000-0001-5064-0928

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAscanImport")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tRNAscanImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAscanImport")

tRNAscanImport HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Preprocessing, Software, Visualization, WorkflowStep

Version 1.31.0

In Bioconductor since BioC 3.7 (R-3.5) (7.5 years)

License GPL-3 + file LICENSE

Depends R (>= 3.5), GenomicRanges, tRNA

Imports methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, Seqinfo, rtracklayer, BSgenome, Rsamtools

System Requirements

URL https://github.com/FelixErnst/tRNAscanImport

Bug Reports https://github.com/FelixErnst/tRNAscanImport/issues

Suggests BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me Structstrings, tRNA

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNAscanImport_1.31.0.tar.gz

Windows Binary (x86_64) tRNAscanImport_1.31.0.zip

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/tRNAscanImport

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAscanImport

Bioc Package Browser https://code.bioconductor.org/browse/tRNAscanImport/

Package Short Url https://bioconductor.org/packages/tRNAscanImport/

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