subSeq

This is the development version of subSeq; for the stable release version, see subSeq.

Subsampling of high-throughput sequencing count data

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DOI: 10.18129/B9.bioc.subSeq

Bioconductor version: Development (3.23)

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

Author: David Robinson, John D. Storey, with contributions from Andrew J. Bass

Maintainer: Andrew J. Bass <ajbass at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("subSeq")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("subSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("subSeq")

subSeq Example PDF R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription

Version 1.41.0

In Bioconductor since BioC 3.2 (R-3.2) (10 years)

License MIT + file LICENSE

Depends R (>= 3.2)

Imports data.table, dplyr, tidyr, ggplot2, magrittr, qvalue(>= 1.99), digest, Biobase

System Requirements

URL http://github.com/StoreyLab/subSeq

Suggests limma, edgeR, DESeq2, DEXSeq(>= 1.9.7), testthat, knitr

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package subSeq_1.41.0.tar.gz

Windows Binary (x86_64) subSeq_1.41.0.zip

macOS Binary (x86_64) subSeq_1.41.0.tgz

macOS Binary (arm64) subSeq_1.41.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/subSeq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/subSeq

Bioc Package Browser https://code.bioconductor.org/browse/subSeq/

Package Short Url https://bioconductor.org/packages/subSeq/

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