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statTarget (development version)

statTarget

This is the development version of statTarget; for the stable release version, see statTarget.

Statistical Analysis of Molecular Profiles

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DOI: 10.18129/B9.bioc.statTarget

Bioconductor version: Development (3.23)

A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.

Author: Hemi Luan

Maintainer: Hemi Luan <hemi.luan at gmail.com>

Citation (from within R, enter citation("statTarget")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("statTarget")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("statTarget")

QC_free approach with Combat method HTML R Script

statTarget2 for pathway analysis HTML R Script

statTarget2 On using the Graphical User Interface HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BatchEffect, ComBat, DifferentialExpression, ImmunoOncology, Lipidomics, Machine Learning, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, Proteomics, QC-RFSC, QualityControl, Software, Visualization

Version 1.41.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License LGPL (>= 3)

Depends R (>= 3.6.0)

Imports randomForest, plyr, pdist, ROC, utils, grDevices, graphics, rrcov, stats, pls, impute

System Requirements

URL https://stattarget.github.io

See More

Suggests testthat, BiocStyle, knitr, rmarkdown

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package statTarget_1.41.0.tar.gz

Windows Binary (x86_64) statTarget_1.41.0.zip

macOS Binary (x86_64) statTarget_1.41.0.tgz

macOS Binary (arm64) statTarget_1.41.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/statTarget

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/statTarget

Bioc Package Browser https://code.bioconductor.org/browse/statTarget/

Package Short Url https://bioconductor.org/packages/statTarget/

Package Downloads Report Download Stats