spatialFDA

This is the development version of spatialFDA; for the stable release version, see spatialFDA.

A Tool for Spatial Multi-sample Comparisons

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DOI: 10.18129/B9.bioc.spatialFDA

Bioconductor version: Development (3.23)

spatialFDA is a package to calculate spatial statistics metrics. The package takes a SpatialExperiment object and calculates spatial statistics metrics using the package spatstat. Then it compares the resulting functions across samples/conditions using functional additive models as implemented in the package refund. Furthermore, it provides exploratory visualisations using functional principal component analysis, as well implemented in refund.

Author: Martin Emons [aut, cre] ORCID iD ORCID: 0009-0000-5219-5311 , Samuel Gunz [aut] ORCID iD ORCID: 0000-0002-8909-0932 , Fabian Scheipl [aut] ORCID iD ORCID: 0000-0001-8172-3603 , Mark D. Robinson [aut, fnd] ORCID iD ORCID: 0000-0002-3048-5518

Maintainer: Martin Emons <martin.emons at uzh.ch>

Citation (from within R, enter citation("spatialFDA")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("spatialFDA")

For older versions of R, please refer to the appropriate Bioconductor release.