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snapcount
This is the development version of snapcount; for the stable release version, see snapcount.
R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts
Bioconductor version: Development (3.23)
snapcount is a client interface to the Snaptron webservices which support querying by gene name or genomic region. Results include raw expression counts derived from alignment of RNA-seq samples and/or various summarized measures of expression across one or more regions/genes per-sample (e.g. percent spliced in).
Author: Rone Charles [aut, cre]
Maintainer: Rone Charles <rcharle8 at jh.edu>
citation("snapcount")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("snapcount")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snapcount")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.