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shinyDSP
This is the development version of shinyDSP; for the stable release version, see shinyDSP.
A Shiny App For Visualizing Nanostring GeoMx DSP Data
Bioconductor version: Development (3.23)
This package is a Shiny app for interactively analyzing and visualizing Nanostring GeoMX Whole Transcriptome Atlas data. Users have the option of exploring a sample data to explore this app's functionality. Regions of interest (ROIs) can be filtered based on any user-provided metadata. Upon taking two or more groups of interest, all pairwise and ANOVA-like testing are automatically performed. Available ouputs include PCA, Volcano plots, tables and heatmaps. Aesthetics of each output are highly customizable.
Author: Seung J. Kim [aut, cre] ORCID iD ORCID: 0000-0001-5263-0758 , Marco Mura [aut, fnd]
Maintainer: Seung J. Kim <skim823 at uwo.ca>
citation("shinyDSP")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("shinyDSP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyDSP")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.