rsbml

This is the development version of rsbml; for the stable release version, see rsbml.

R support for SBML, using libsbml

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DOI: 10.18129/B9.bioc.rsbml

Bioconductor version: Development (3.23)

Links R to libsbml for SBML parsing, validating output, provides an S4 SBML DOM, converts SBML to R graph objects. Optionally links to the SBML ODE Solver Library (SOSLib) for simulating models.

Author: Michael Lawrence <michafla at gene.com>

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("rsbml")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rsbml")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rsbml")

Quick start for rsbml PDF R Script

Reference Manual PDF

NEWS Text

INSTALL Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Network, Pathways, Software

Version 2.69.0

In Bioconductor since BioC 2.1 (R-2.6) (18 years)

License Artistic-2.0

Depends R (>= 2.6.0), BiocGenerics(>= 0.3.2), methods, utils

Imports BiocGenerics, graph, utils

System Requirements libsbml (==5.10.2)

URL http://www.sbml.org

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me piano, SBMLR

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rsbml_2.69.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/rsbml

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rsbml

Bioc Package Browser https://code.bioconductor.org/browse/rsbml/

Package Short Url https://bioconductor.org/packages/rsbml/

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