quantro

This is the development version of quantro; for the stable release version, see quantro.

A test for when to use quantile normalization

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DOI: 10.18129/B9.bioc.quantro

Bioconductor version: Development (3.23)

A data-driven test for the assumptions of quantile normalization using raw data such as objects that inherit eSets (e.g. ExpressionSet, MethylSet). Group level information about each sample (such as Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.

Author: Stephanie Hicks [aut, cre] ORCID iD ORCID: 0000-0002-7858-0231 , Rafael Irizarry [aut] ORCID iD ORCID: 0000-0002-3944-4309

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("quantro")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("quantro")

For older versions of R, please refer to the appropriate Bioconductor release.