qsea

This is the development version of qsea; for the stable release version, see qsea.

IP-seq data analysis and vizualization

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DOI: 10.18129/B9.bioc.qsea

Bioconductor version: Development (3.23)

qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.

Author: Matthias Lienhard [aut, cre] ORCID iD ORCID: 0000-0002-2549-3142 , Lukas Chavez [aut] ORCID iD ORCID: 0000-0002-8718-8848 , Ralf Herwig [aut] ORCID iD ORCID: 0000-0002-9335-1760

Maintainer: Matthias Lienhard <lienhard at molgen.mpg.de>

Citation (from within R, enter citation("qsea")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qsea")

For older versions of R, please refer to the appropriate Bioconductor release.