phantasusLite

This is the development version of phantasusLite; for the stable release version, see phantasusLite.

Loading and annotation RNA-seq counts matrices

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DOI: 10.18129/B9.bioc.phantasusLite

Bioconductor version: Development (3.23)

PhantasusLite – a lightweight package with helper functions of general interest extracted from phantasus package. In parituclar it simplifies working with public RNA-seq datasets from GEO by providing access to the remote HSDS repository with the precomputed gene counts from ARCHS4 and DEE2 projects.

Author: Rita Sablina [aut], Maxim Kleverov [aut], Alexey Sergushichev [aut, cre]

Maintainer: Alexey Sergushichev <alsergbox at gmail.com>

Citation (from within R, enter citation("phantasusLite")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("phantasusLite")

For older versions of R, please refer to the appropriate Bioconductor release.