pdInfoBuilder

This is the development version of pdInfoBuilder; for the stable release version, see pdInfoBuilder.

Platform Design Information Package Builder

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.pdInfoBuilder

Bioconductor version: Development (3.23)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho <benilton at unicamp.br>

Citation (from within R, enter citation("pdInfoBuilder")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pdInfoBuilder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pdInfoBuilder")

Building Annotation Packages with pdInfoBuilder for Use with the oligo Package PDF

PDInfo Package Building Affymetrix Mapping Chips PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Infrastructure, Software

Version 1.75.0

In Bioconductor since BioC 2.0 (R-2.5) (18.5 years)

License Artistic-2.0

Depends R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5)

Imports Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22)

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me maqcExpression4plex, aroma.affymetrix, maGUI

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pdInfoBuilder_1.75.0.tar.gz

Windows Binary (x86_64) pdInfoBuilder_1.75.0.zip (64-bit only)

macOS Binary (x86_64) pdInfoBuilder_1.75.0.tgz

macOS Binary (arm64) pdInfoBuilder_1.75.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/pdInfoBuilder

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pdInfoBuilder

Bioc Package Browser https://code.bioconductor.org/browse/pdInfoBuilder/

Package Short Url https://bioconductor.org/packages/pdInfoBuilder/

Package Downloads Report Download Stats