pandaR

This is the development version of pandaR; for the stable release version, see pandaR.

PANDA Algorithm

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DOI: 10.18129/B9.bioc.pandaR

Bioconductor version: Development (3.23)

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <paulson.joseph at gene.com>, Dan Schlauch <dschlauch at genospace.com>

Citation (from within R, enter citation("pandaR")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pandaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pandaR")

pandaR Package HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription

Version 1.43.0

In Bioconductor since BioC 3.1 (R-3.2) (10.5 years)

License GPL-2

Depends R (>= 3.0.0), methods, Biobase, BiocGenerics

Imports matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin

System Requirements

URL

Suggests knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pandaR_1.43.0.tar.gz

Windows Binary (x86_64) pandaR_1.43.0.zip

macOS Binary (x86_64) pandaR_1.43.0.tgz

macOS Binary (arm64) pandaR_1.43.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/pandaR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pandaR

Bioc Package Browser https://code.bioconductor.org/browse/pandaR/

Package Short Url https://bioconductor.org/packages/pandaR/

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