myvariant

This is the development version of myvariant; for the stable release version, see myvariant.

Accesses MyVariant.info variant query and annotation services

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.myvariant

Bioconductor version: Development (3.23)

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

Author: Adam Mark

Maintainer: Adam Mark, Chunlei Wu <cwu at scripps.edu>

Citation (from within R, enter citation("myvariant")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("myvariant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("myvariant")

Using MyVariant.R PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, GenomicVariation, Software, VariantAnnotation

Version 1.41.0

In Bioconductor since BioC 3.2 (R-3.2) (10 years)

License Artistic-2.0

Depends R (>= 3.2.1), VariantAnnotation

Imports httr, jsonlite, S4Vectors, Hmisc, plyr, magrittr, Seqinfo, GenomeInfoDb

System Requirements

URL

Suggests BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package myvariant_1.41.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/myvariant

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/myvariant

Bioc Package Browser https://code.bioconductor.org/browse/myvariant/

Package Short Url https://bioconductor.org/packages/myvariant/

Package Downloads Report Download Stats