microbiomeDASim

This is the development version of microbiomeDASim; for the stable release version, see microbiomeDASim.

Microbiome Differential Abundance Simulation

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DOI: 10.18129/B9.bioc.microbiomeDASim

Bioconductor version: Development (3.23)

A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.

Author: Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson

Maintainer: Justin Williams <williazo at ucla.edu>

Citation (from within R, enter citation("microbiomeDASim")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("microbiomeDASim")

For older versions of R, please refer to the appropriate Bioconductor release.