miRcomp

This is the development version of miRcomp; for the stable release version, see miRcomp.

Tools to assess and compare miRNA expression estimatation methods

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DOI: 10.18129/B9.bioc.miRcomp

Bioconductor version: Development (3.23)

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

Author: Matthew N. McCall <mccallm at gmail.com>, Lauren Kemperman <lkemperm at u.rochester.edu>

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("miRcomp")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("miRcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRcomp")

Assessment and comparison of miRNA expression estimation methods (miRcomp) HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Preprocessing, QualityControl, Software, qPCR

Version 1.41.0

In Bioconductor since BioC 3.2 (R-3.2) (10 years)

License GPL-3 | file LICENSE

Depends R (>= 3.5.0), Biobase(>= 2.22.0), miRcompData

Imports utils, methods, graphics, KernSmooth, stats

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRcomp_1.41.0.tar.gz

Windows Binary (x86_64) miRcomp_1.41.0.zip

macOS Binary (x86_64) miRcomp_1.41.0.tgz

macOS Binary (arm64) miRcomp_1.41.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/miRcomp

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRcomp

Bioc Package Browser https://code.bioconductor.org/browse/miRcomp/

Package Short Url https://bioconductor.org/packages/miRcomp/

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