ldblock

This is the development version of ldblock; for the stable release version, see ldblock.

data structures for linkage disequilibrium measures in populations

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DOI: 10.18129/B9.bioc.ldblock

Bioconductor version: Development (3.23)

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")

ldblock package: linkage disequilibrium data structures HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Software

Version 1.41.0

In Bioconductor since BioC 3.2 (R-3.2) (10 years)

License Artistic-2.0

Depends R (>= 3.5), methods, rlang

Imports BiocGenerics(>= 0.25.1), Seqinfo, httr, Matrix

System Requirements

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Suggests RUnit, knitr, BiocStyle, gwascat, rmarkdown, snpStats, VariantAnnotation, GenomeInfoDb, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles(>= 1.13.6)

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ldblock_1.41.0.tar.gz

Windows Binary (x86_64) ldblock_1.41.0.zip

macOS Binary (x86_64) ldblock_1.41.0.tgz

macOS Binary (arm64) ldblock_1.41.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ldblock

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ldblock

Bioc Package Browser https://code.bioconductor.org/browse/ldblock/

Package Short Url https://bioconductor.org/packages/ldblock/

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