keggorthology

This is the development version of keggorthology; for the stable release version, see keggorthology.

graph support for KO, KEGG Orthology

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DOI: 10.18129/B9.bioc.keggorthology

Bioconductor version: Development (3.23)

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("keggorthology")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("keggorthology")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("keggorthology")

keggorthology overview PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, Visualization

Version 2.63.0

In Bioconductor since BioC 2.6 (R-2.11) (15.5 years)

License Artistic-2.0

Depends R (>= 2.5.0), hgu95av2.db, graph

Imports AnnotationDbi, DBI, grDevices, methods, tools, utils

System Requirements

URL

Suggests RBGL, ALL

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me MLInterfaces

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package keggorthology_2.63.0.tar.gz

Windows Binary (x86_64) keggorthology_2.63.0.zip

macOS Binary (x86_64) keggorthology_2.63.0.tgz

macOS Binary (arm64) keggorthology_2.63.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/keggorthology

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/keggorthology

Bioc Package Browser https://code.bioconductor.org/browse/keggorthology/

Package Short Url https://bioconductor.org/packages/keggorthology/

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