geneClassifiers

This is the development version of geneClassifiers; for the stable release version, see geneClassifiers.

Application of gene classifiers

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DOI: 10.18129/B9.bioc.geneClassifiers

Bioconductor version: Development (3.23)

This packages aims for easy accessible application of classifiers which have been published in literature using an ExpressionSet as input.

Author: R Kuiper [cre, aut] ORCID iD ORCID: 0000-0002-3703-1762

Maintainer: R Kuiper <r.kuiper.emc at gmail.com>

Citation (from within R, enter citation("geneClassifiers")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("geneClassifiers")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneClassifiers")

geneClassifiers and missing probesets PDF

geneClassifiers introduction PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, Classification, GeneExpression, Microarray, Software, Survival

Version 1.35.0

In Bioconductor since BioC 3.5 (R-3.4) (8.5 years)

License GPL-2

Depends R (>= 3.6.0)

Imports utils, methods, stats, Biobase, BiocGenerics

System Requirements

URL https://doi.org/doi:10.18129/B9.bioc.geneClassifiers

Bug Reports https://github.com/rkuiper/geneClassifiers/issues

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneClassifiers_1.35.0.tar.gz

Windows Binary (x86_64) geneClassifiers_1.35.0.zip

macOS Binary (x86_64) geneClassifiers_1.35.0.tgz

macOS Binary (arm64) geneClassifiers_1.35.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/geneClassifiers

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneClassifiers

Bioc Package Browser https://code.bioconductor.org/browse/geneClassifiers/

Package Short Url https://bioconductor.org/packages/geneClassifiers/

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