flowTrans

This is the development version of flowTrans; for the stable release version, see flowTrans.

Parameter Optimization for Flow Cytometry Data Transformation

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DOI: 10.18129/B9.bioc.flowTrans

Bioconductor version: Development (3.23)

Profile maximum likelihood estimation of parameters for flow cytometry data transformations.

Author: Greg Finak <gfinak at fredhutch.org>, Juan Manuel-Perez <jperez at ircm.qc.ca>, Raphael Gottardo <rgottard at fredhutch.org>

Maintainer: Greg Finak <gfinak at fredhutch.org>

Citation (from within R, enter citation("flowTrans")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("flowTrans")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowTrans")

flowTrans package PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FlowCytometry, ImmunoOncology, Software

Version 1.63.0

In Bioconductor since BioC 2.6 (R-2.11) (15.5 years)

License Artistic-2.0

Depends R (>= 2.11.0), flowCore, flowViz, flowClust

Imports flowCore, methods, flowViz, stats, flowClust

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowTrans_1.63.0.tar.gz

Windows Binary (x86_64) flowTrans_1.63.0.zip

macOS Binary (x86_64) flowTrans_1.63.0.tgz

macOS Binary (arm64) flowTrans_1.63.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowTrans

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowTrans

Bioc Package Browser https://code.bioconductor.org/browse/flowTrans/

Package Short Url https://bioconductor.org/packages/flowTrans/

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