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flowGraph (development version)

flowGraph

This is the development version of flowGraph; for the stable release version, see flowGraph.

Identifying differential cell populations in flow cytometry data accounting for marker frequency

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DOI: 10.18129/B9.bioc.flowGraph

Bioconductor version: Development (3.23)

Identifies maximal differential cell populations in flow cytometry data taking into account dependencies between cell populations; flowGraph calculates and plots SpecEnr abundance scores given cell population cell counts.

Author: Alice Yue [aut, cre]

Maintainer: Alice Yue <aya43 at sfu.ca>

Citation (from within R, enter citation("flowGraph")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("flowGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowGraph")

flowGraph HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software, StatisticalMethod, Visualization

Version 1.19.0

In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)

License Artistic-2.0

Depends R (>= 4.1)

Imports effsize, furrr, future, purrr, ggiraph, ggrepel, ggplot2, igraph, Matrix, matrixStats, stats, utils, visNetwork, htmlwidgets, grDevices, methods, stringr, stringi, Rdpack, data.table (>= 1.9.5), gridExtra

System Requirements

URL https://github.com/aya49/flowGraph

Bug Reports https://github.com/aya49/flowGraph/issues

See More

Suggests BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0)

Linking To

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowGraph_1.19.0.tar.gz

Windows Binary (x86_64) flowGraph_1.19.0.zip

macOS Binary (x86_64) flowGraph_1.19.0.tgz

macOS Binary (arm64) flowGraph_1.19.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowGraph

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowGraph

Bioc Package Browser https://code.bioconductor.org/browse/flowGraph/

Package Short Url https://bioconductor.org/packages/flowGraph/

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