epivizrChart

This is the development version of epivizrChart; for the stable release version, see epivizrChart.

R interface to epiviz web components

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DOI: 10.18129/B9.bioc.epivizrChart

Bioconductor version: Development (3.23)

This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.

Author: Brian Gottfried [aut], Jayaram Kancherla [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrChart")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("epivizrChart")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrChart")

Introduction to epivizrChart HTML R Script

Visualizing `RangeSummarizedExperiment` objects Shiny Apps using epivizrChart HTML R Script

Visualizing Files with epivizrChart HTML R Script

Visualizing genomic data in Shiny Apps using epivizrChart HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GUI, Software, Visualization

Version 1.33.0

In Bioconductor since BioC 3.6 (R-3.4) (8 years)

License Artistic-2.0

Depends R (>= 3.5.0)

Imports epivizrData(>= 1.5.1), epivizrServer, htmltools, rjson, methods, BiocGenerics

System Requirements

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrChart_1.33.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) epivizrChart_1.33.0.tgz

macOS Binary (arm64) epivizrChart_1.33.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/epivizrChart

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrChart

Bioc Package Browser https://code.bioconductor.org/browse/epivizrChart/

Package Short Url https://bioconductor.org/packages/epivizrChart/

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