coRdon

This is the development version of coRdon; for the stable release version, see coRdon.

Codon Usage Analysis and Prediction of Gene Expressivity

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DOI: 10.18129/B9.bioc.coRdon

Bioconductor version: Development (3.23)

Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.

Author: Anamaria Elek [cre, aut], Maja Kuzman [aut], Kristian Vlahovicek [aut]

Maintainer: Anamaria Elek <anamariaelek at gmail.com>

Citation (from within R, enter citation("coRdon")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("coRdon")

For older versions of R, please refer to the appropriate Bioconductor release.