clusterStab

This is the development version of clusterStab; for the stable release version, see clusterStab.

Compute cluster stability scores for microarray data

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DOI: 10.18129/B9.bioc.clusterStab

Bioconductor version: Development (3.23)

This package can be used to estimate the number of clusters in a set of microarray data, as well as test the stability of these clusters.

Author: James W. MacDonald, Debashis Ghosh, Mark Smolkin

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("clusterStab")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("clusterStab")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterStab")

clusterStab Overview PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, Software

Version 1.83.0

In Bioconductor since BioC 1.7 (R-2.2) (20 years)

License Artistic-2.0

Depends Biobase(>= 1.4.22), R (>= 1.9.0), methods

Imports

System Requirements

URL

Suggests fibroEset, genefilter

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clusterStab_1.83.0.tar.gz

Windows Binary (x86_64) clusterStab_1.83.0.zip

macOS Binary (x86_64) clusterStab_1.83.0.tgz

macOS Binary (arm64) clusterStab_1.83.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/clusterStab

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clusterStab

Bioc Package Browser https://code.bioconductor.org/browse/clusterStab/

Package Short Url https://bioconductor.org/packages/clusterStab/

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