cellity

This is the development version of cellity; for the stable release version, see cellity.

Quality Control for Single-Cell RNA-seq Data

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DOI: 10.18129/B9.bioc.cellity

Bioconductor version: Development (3.23)

A support vector machine approach to identifying and filtering low quality cells from single-cell RNA-seq datasets.

Author: Tomislav Illicic, Davis McCarthy

Maintainer: Tomislav Ilicic <ti243 at cam.ac.uk>

Citation (from within R, enter citation("cellity")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cellity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellity")

An introduction to the cellity package HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DimensionReduction, GeneExpression, ImmunoOncology, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, Software, SupportVectorMachine, Transcriptomics, Visualization

Version 1.39.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL (>= 2)

Depends R (>= 3.3)

Imports AnnotationDbi, e1071, ggplot2, graphics, grDevices, grid, mvoutlier, org.Hs.eg.db, org.Mm.eg.db, robustbase, stats, topGO, utils

System Requirements

URL

Suggests BiocStyle, caret, knitr, testthat, rmarkdown

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Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellity_1.39.0.tar.gz

Windows Binary (x86_64) cellity_1.39.0.zip

macOS Binary (x86_64) cellity_1.39.0.tgz

macOS Binary (arm64) cellity_1.39.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/cellity

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellity

Bioc Package Browser https://code.bioconductor.org/browse/cellity/

Package Short Url https://bioconductor.org/packages/cellity/

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