affylmGUI

This is the development version of affylmGUI; for the stable release version, see affylmGUI.

GUI for limma Package with Affymetrix Microarrays

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DOI: 10.18129/B9.bioc.affylmGUI

Bioconductor version: Development (3.23)

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Gordon Smyth [aut], Ken Simpson [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("affylmGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")

about.html HTML

affylmGUI Vignette PDF R Script

CustMenu.html HTML

Extracting affy and limma objects from affylmGUI files PDF

index.html HTML

windowsFocus.html HTML

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray

Version 1.85.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20.5 years)

License GPL (>=2)

Depends

Imports grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, AnnotationDbi, BiocManager, R2HTML, xtable

System Requirements

URL http://bioinf.wehi.edu.au/affylmGUI/

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affylmGUI_1.85.0.tar.gz

Windows Binary (x86_64) affylmGUI_1.85.0.zip

macOS Binary (x86_64) affylmGUI_1.85.0.tgz

macOS Binary (arm64) affylmGUI_1.85.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/affylmGUI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affylmGUI

Bioc Package Browser https://code.bioconductor.org/browse/affylmGUI/

Package Short Url https://bioconductor.org/packages/affylmGUI/

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