SUITOR

This is the development version of SUITOR; for the stable release version, see SUITOR.

Selecting the number of mutational signatures through cross-validation

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DOI: 10.18129/B9.bioc.SUITOR

Bioconductor version: Development (3.23)

An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.

Author: DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]

Maintainer: Bill Wheeler <wheelerb at imsweb.com>

Citation (from within R, enter citation("SUITOR")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SUITOR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SUITOR")

SUITOR: selecting the number of mutational signatures PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Genetics, Software, SomaticMutation

Version 1.13.0

In Bioconductor since BioC 3.16 (R-4.2) (3 years)

License GPL-2

Depends R (>= 4.2.0)

Imports stats, utils, graphics, ggplot2, BiocParallel

System Requirements

URL

Bug Reports https://github.com/wheelerb/SUITOR/issues

Suggests devtools, MutationalPatterns, RUnit, BiocManager, BiocGenerics, BiocStyle, knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SUITOR_1.13.0.tar.gz

Windows Binary (x86_64) SUITOR_1.13.0.zip

macOS Binary (x86_64) SUITOR_1.13.0.tgz

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/SUITOR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SUITOR

Bioc Package Browser https://code.bioconductor.org/browse/SUITOR/

Package Short Url https://bioconductor.org/packages/SUITOR/

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