SELEX

This is the development version of SELEX; for the stable release version, see SELEX.

Functions for analyzing SELEX-seq data

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DOI: 10.18129/B9.bioc.SELEX

Bioconductor version: Development (3.23)

Tools for quantifying DNA binding specificities based on SELEX-seq data.

Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker

Maintainer: Harmen J. Bussemaker <hjb2004 at columbia.edu>

Citation (from within R, enter citation("SELEX")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SELEX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")

Motif Discovery with SELEX-seq PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription

Version 1.43.0

In Bioconductor since BioC 3.1 (R-3.2) (10.5 years)

License GPL (>=2)

Depends rJava (>= 0.5-0), Biostrings(>= 2.26.0)

Imports stats, utils

System Requirements Java (>= 1.5)

URL https://bussemakerlab.org/site/software/

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SELEX_1.43.0.tar.gz

Windows Binary (x86_64) SELEX_1.43.0.zip

macOS Binary (x86_64) SELEX_1.43.0.tgz

macOS Binary (arm64) SELEX_1.43.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SELEX

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SELEX

Bioc Package Browser https://code.bioconductor.org/browse/SELEX/

Package Short Url https://bioconductor.org/packages/SELEX/

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