Rbowtie

This is the development version of Rbowtie; for the stable release version, see Rbowtie.

R bowtie wrapper

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DOI: 10.18129/B9.bioc.Rbowtie

Bioconductor version: Development (3.23)

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Author: Florian Hahne [aut], Anita Lerch [aut], Michael Stadler [aut, cre] ORCID iD ORCID: 0000-0002-2269-4934

Maintainer: Michael Stadler <michael.stadler at fmi.ch>

Citation (from within R, enter citation("Rbowtie")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rbowtie")

For older versions of R, please refer to the appropriate Bioconductor release.