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RSVSim
This is the development version of RSVSim; for the stable release version, see RSVSim.
RSVSim: an R/Bioconductor package for the simulation of structural variations
Bioconductor version: Development (3.23)
RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>
citation("RSVSim")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RSVSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RSVSim")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.