ROTS

This is the development version of ROTS; for the stable release version, see ROTS.

Reproducibility-Optimized Test Statistic

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DOI: 10.18129/B9.bioc.ROTS

Bioconductor version: Development (3.23)

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Tomi Suomi <tomi.suomi at utu.fi>

Citation (from within R, enter citation("ROTS")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ROTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")

ROTS: Reproducibility Optimized Test Statistic PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, Proteomics, RNASeq, Software

Version 2.3.1

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL (>= 2)

Depends R (>= 3.6)

Imports Rcpp, stats, Biobase, methods, BiocParallel, lme4

System Requirements

URL

Suggests testthat

Linking To Rcpp

Enhances

Depends On Me

Imports Me PECA, PRONE

Suggests Me LimROTS, wrProteo

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ROTS_2.3.1.tar.gz

Windows Binary (x86_64) ROTS_2.3.0.zip (64-bit only)

macOS Binary (x86_64) ROTS_2.3.0.tgz

macOS Binary (arm64) ROTS_2.3.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/ROTS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ROTS

Bioc Package Browser https://code.bioconductor.org/browse/ROTS/

Package Short Url https://bioconductor.org/packages/ROTS/

Package Downloads Report Download Stats