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RCM
This is the development version of RCM; for the stable release version, see RCM.
Fit row-column association models with the negative binomial distribution for the microbiome
DOI: 10.18129/B9.bioc.RCM
Bioconductor version: Development (3.23)
Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.
Author: Stijn Hawinkel [cre, aut] ORCID iD ORCID: 0000-0002-4501-5180
Maintainer: Stijn Hawinkel <stijn.hawinkel at psb.ugent.be>
citation("RCM")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RCM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCM")
Details
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Follow Installation instructions to use this package in your R session.