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Oscope
This is the development version of Oscope; for the stable release version, see Oscope.
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Bioconductor version: Development (3.23)
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
Author: Ning Leng
Maintainer: Ning Leng <lengning1 at gmail.com>
citation("Oscope")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Oscope")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Oscope")
Details
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Follow Installation instructions to use this package in your R session.