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MSstatsConvert

This is the development version of MSstatsConvert; for the stable release version, see MSstatsConvert.

Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format


Bioconductor version: Development (3.23)

MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.

Author: Mateusz Staniak [aut, cre], Devon Kohler [aut], Anthony Wu [aut], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Citation (from within R, enter citation("MSstatsConvert")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MSstatsConvert")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsConvert")
Working with MSstatsConvert HTML R Script
Reference Manual PDF
NEWS Text

Details

Version 1.21.0
In Bioconductor since BioC 3.12 (R-4.0) (5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports data.table, log4r, methods, checkmate, utils, stringi, Rcpp, parallel
System Requirements
URL
See More
Linking To Rcpp
Enhances
Depends On Me
Suggests Me MSstatsBioNet
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) MSstatsConvert_1.21.0.zip (64-bit only)
macOS Binary (x86_64) MSstatsConvert_1.21.0.tgz
macOS Binary (arm64) MSstatsConvert_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsConvert
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsConvert
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