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GeoTcgaData
This is the development version of GeoTcgaData; for the stable release version, see GeoTcgaData.
Processing Various Types of Data on GEO and TCGA
Bioconductor version: Development (3.23)
Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.
Author: Erqiang Hu [aut, cre] ORCID iD ORCID: 0000-0002-1798-7513
Maintainer: Erqiang Hu <13766876214 at 163.com>
citation("GeoTcgaData")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GeoTcgaData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeoTcgaData")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.