GeneOverlap

This is the development version of GeneOverlap; for the stable release version, see GeneOverlap.

Test and visualize gene overlaps

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DOI: 10.18129/B9.bioc.GeneOverlap

Bioconductor version: Development (3.23)

Test two sets of gene lists and visualize the results.

Author: Li Shen, Icahn School of Medicine at Mount Sinai <shenli.sam at gmail.com>

Maintainer: Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for Cell Biology and Genetics <amjdomingues at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")

Testing and visualizing gene overlaps with the "GeneOverlap" package PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews MultipleComparison, Software, Visualization

Version 1.47.0

In Bioconductor since BioC 2.14 (R-3.1) (11.5 years)

License GPL-3

Depends

Imports stats, RColorBrewer, gplots, methods

System Requirements

URL http://shenlab-sinai.github.io/shenlab-sinai/

Suggests RUnit, BiocGenerics, BiocStyle

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneOverlap_1.47.0.tar.gz

Windows Binary (x86_64) GeneOverlap_1.47.0.zip

macOS Binary (x86_64) GeneOverlap_1.47.0.tgz

macOS Binary (arm64) GeneOverlap_1.47.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GeneOverlap

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneOverlap

Bioc Package Browser https://code.bioconductor.org/browse/GeneOverlap/

Package Short Url https://bioconductor.org/packages/GeneOverlap/

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