FinfoMDS

This is the development version of FinfoMDS; for the stable release version, see FinfoMDS.

Multidimensional Scaling with F-ratio for microbiome visualization

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.FinfoMDS

Bioconductor version: Development (3.23)

F-informed MDS is a new multidimensional scaling-based ordination method that configures data distribution based on the F-statistic (i.e., the ratio of dispersion between groups with shared or differing labels).

Author: Soobin Kim [aut, cre], Hyungseok Kim [aut]

Maintainer: Soobin Kim <soob.kim00 at gmail.com>

Citation (from within R, enter citation("FinfoMDS")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("FinfoMDS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FinfoMDS")

vignette HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DimensionReduction, Microbiome, MultidimensionalScaling, Software, Visualization

Version 1.1.0

In Bioconductor since BioC 3.22 (R-4.5) (< 6 months)

License GPL-3

Depends R (>= 4.4.0)

Imports phyloseq

System Requirements

URL https://github.com/soob-kim/FinfoMDS

Bug Reports https://github.com/soob-kim/FinfoMDS/issues

Suggests testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FinfoMDS_1.1.0.tar.gz

Windows Binary (x86_64) FinfoMDS_1.1.0.zip

macOS Binary (x86_64) FinfoMDS_1.1.0.tgz

macOS Binary (arm64) FinfoMDS_1.1.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/FinfoMDS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FinfoMDS

Bioc Package Browser https://code.bioconductor.org/browse/FinfoMDS/

Package Short Url https://bioconductor.org/packages/FinfoMDS/

Package Downloads Report Download Stats