DNAcycP2

This is the development version of DNAcycP2; for the stable release version, see DNAcycP2.

DNA Cyclizability Prediction

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DOI: 10.18129/B9.bioc.DNAcycP2

Bioconductor version: Development (3.23)

This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.

Author: Ji-Ping Wang [aut, cre] ORCID iD ORCID: 0000-0002-8398-939X

Maintainer: Ji-Ping Wang <jzwang at northwestern.edu>

Citation (from within R, enter citation("DNAcycP2")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DNAcycP2")

For older versions of R, please refer to the appropriate Bioconductor release.