CTdata

This is the development version of CTdata; for the stable release version, see CTdata.

Data companion to CTexploreR

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DOI: 10.18129/B9.bioc.CTdata

Bioconductor version: Development (3.23)

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Author: Axelle Loriot [aut] ORCID iD ORCID: 0000-0002-5288-8561 , Julie Devis [aut] ORCID iD ORCID: 0000-0001-5525-5666 , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre] ORCID iD ORCID: 0000-0002-1520-2268

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("CTdata")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CTdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CTdata")

Cancer Testis Datasets HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics

Version 1.11.0

In Bioconductor since BioC 3.17 (R-4.3) (2.5 years)

License Artistic-2.0

Depends R (>= 4.2)

Imports ExperimentHub, utils

System Requirements

URL

Bug Reports https://github.com/UCLouvain-CBIO/CTdata/issues

Suggests testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment

Linking To

Enhances

Depends On Me CTexploreR

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTdata_1.11.0.tar.gz

Windows Binary (x86_64) CTdata_1.11.0.zip

macOS Binary (x86_64) CTdata_1.11.0.tgz

macOS Binary (arm64) CTdata_1.11.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CTdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTdata

Bioc Package Browser https://code.bioconductor.org/browse/CTdata/

Package Short Url https://bioconductor.org/packages/CTdata/

Package Downloads Report Download Stats