CONFESS

This is the development version of CONFESS; for the stable release version, see CONFESS.

Cell OrderiNg by FluorEScence Signal

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DOI: 10.18129/B9.bioc.CONFESS

Bioconductor version: Development (3.23)

Single Cell Fluidigm Spot Detector.

Author: Diana LOW and Efthimios MOTAKIS

Maintainer: Diana LOW <lowdiana at gmail.com>

Citation (from within R, enter citation("CONFESS")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CONFESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CONFESS")

CONFESS PDF R Script

CONFESS Walkthrough HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBiology, Classification, Clustering, DataImport, GeneExpression, ImmunoOncology, QualityControl, RNASeq, Regression, Software, TimeCourse, Visualization

Version 1.39.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL-2

Depends R (>= 3.3), grDevices, utils, stats, graphics

Imports methods, changepoint, cluster, contrast, data.table (>= 1.9.7), ecp, EBImage, flexmix, flowCore, flowClust, flowMeans, flowMerge, flowPeaks, foreach, ggplot2, grid, limma, MASS, moments, outliers, parallel, plotrix, raster, readbitmap, reshape2, SamSPECTRAL, waveslim, wavethresh, zoo

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown, CONFESSdata

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CONFESS_1.39.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) CONFESS_1.39.0.tgz

macOS Binary (arm64) CONFESS_1.39.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CONFESS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CONFESS

Bioc Package Browser https://code.bioconductor.org/browse/CONFESS/

Package Short Url https://bioconductor.org/packages/CONFESS/

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