CNORdt

This is the development version of CNORdt; for the stable release version, see CNORdt.

Add-on to CellNOptR: Discretized time treatments

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.CNORdt

Bioconductor version: Development (3.23)

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Author: A. MacNamara

Maintainer: A. MacNamara <aidan.macnamara at ebi.ac.uk>

Citation (from within R, enter citation("CNORdt")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CNORdt")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORdt")

Using multiple time points to train logic models to data PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse

Version 1.53.0

In Bioconductor since BioC 2.11 (R-2.15) (13 years)

License GPL-2

Depends R (>= 1.8.0), CellNOptR(>= 0.99), abind

Imports

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNORdt_1.53.0.tar.gz

Windows Binary (x86_64) CNORdt_1.53.0.zip (64-bit only)

macOS Binary (x86_64) CNORdt_1.53.0.tgz

macOS Binary (arm64) CNORdt_1.53.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CNORdt

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNORdt

Bioc Package Browser https://code.bioconductor.org/browse/CNORdt/

Package Short Url https://bioconductor.org/packages/CNORdt/

Package Downloads Report Download Stats