CAFE

This is the development version of CAFE; for the stable release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

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DOI: 10.18129/B9.bioc.CAFE

Bioconductor version: Development (3.23)

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CAFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")

Manual PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software

Version 1.47.0

In Bioconductor since BioC 2.14 (R-3.1) (11.5 years)

License GPL-3

Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio

Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase

System Requirements

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Suggests RUnit, BiocGenerics, BiocStyle

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAFE_1.47.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/CAFE

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CAFE

Bioc Package Browser https://code.bioconductor.org/browse/CAFE/

Package Short Url https://bioconductor.org/packages/CAFE/

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