BaseSpaceR

This is the development version of BaseSpaceR; for the stable release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

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DOI: 10.18129/B9.bioc.BaseSpaceR

Bioconductor version: Development (3.23)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at illumina.com>

Citation (from within R, enter citation("BaseSpaceR")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BaseSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")

BaseSpaceR PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software

Version 1.55.0

In Bioconductor since BioC 2.12 (R-3.0) (12.5 years)

License Apache License 2.0

Depends R (>= 2.15.0), RCurl, RJSONIO

Imports methods

System Requirements

URL

Suggests RUnit, IRanges, Rsamtools

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BaseSpaceR_1.55.0.tar.gz

Windows Binary (x86_64) BaseSpaceR_1.55.0.zip

macOS Binary (x86_64) BaseSpaceR_1.55.0.tgz

macOS Binary (arm64) BaseSpaceR_1.55.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BaseSpaceR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BaseSpaceR

Bioc Package Browser https://code.bioconductor.org/browse/BaseSpaceR/

Package Short Url https://bioconductor.org/packages/BaseSpaceR/

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