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AlphaBeta
This is the development version of AlphaBeta; for the stable release version, see AlphaBeta.
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Bioconductor version: Development (3.23)
AlphaBeta is a computational method for estimating epimutation rates and spectra from high-throughput DNA methylation data in plants. The method has been specifically designed to: 1. analyze 'germline' epimutations in the context of multi-generational mutation accumulation lines (MA-lines). 2. analyze 'somatic' epimutations in the context of plant development and aging.
Author: Yadollah Shahryary Dizaji [cre, aut], Frank Johannes [aut], Rashmi Hazarika [aut]
Maintainer: Yadollah Shahryary Dizaji <shahryary at gmail.com>
citation("AlphaBeta")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AlphaBeta")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AlphaBeta")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.