cliProfiler

This is the released version of cliProfiler; for the devel version, see cliProfiler.

A package for the CLIP data visualization

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DOI: 10.18129/B9.bioc.cliProfiler

Bioconductor version: Release (3.22)

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Author: You Zhou [aut, cre] ORCID iD ORCID: 0000-0003-1755-9073 , Kathi Zarnack [aut] ORCID iD ORCID: 0000-0003-3527-3378

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("cliProfiler")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("cliProfiler")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cliProfiler")

cliProfiler Vignettes HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ChIPSeq, Epigenetics, Genetics, Sequencing, Software, Visualization

Version 1.16.0

In Bioconductor since BioC 3.14 (R-4.1) (4 years)

License Artistic-2.0

Depends S4Vectors, methods, R (>= 4.1)

Imports dplyr, rtracklayer, GenomicRanges, ggplot2, BSgenome, Biostrings, utils

System Requirements

URL https://github.com/Codezy99/cliProfiler

Bug Reports https://github.com/Codezy99/cliProfiler/issues

Suggests knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cliProfiler_1.16.0.tar.gz

Windows Binary (x86_64) cliProfiler_1.16.0.zip

macOS Binary (x86_64) cliProfiler_1.16.0.tgz

macOS Binary (arm64) cliProfiler_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/cliProfiler

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cliProfiler

Bioc Package Browser https://code.bioconductor.org/browse/cliProfiler/

Package Short Url https://bioconductor.org/packages/cliProfiler/

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