ccdata

This is the released version of ccdata; for the devel version, see ccdata.

Data for Combination Connectivity Mapping (ccmap) Package

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DOI: 10.18129/B9.bioc.ccdata

Bioconductor version: Release (3.22)

This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccdata")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ccdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExpressionData, MicroarrayData

Version 1.36.0

License MIT + file LICENSE

Depends R (>= 3.3)

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Follow Installation instructions to use this package in your R session.

Source Package ccdata_1.36.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/ccdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ccdata

Package Short Url https://bioconductor.org/packages/ccdata/

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