RTCGA.mutations

This is the released version of RTCGA.mutations; for the devel version, see RTCGA.mutations.

Mutations datasets from The Cancer Genome Atlas Project

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DOI: 10.18129/B9.bioc.RTCGA.mutations

Bioconductor version: Release (3.22)

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015年11月01日 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.mutations")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RTCGA.mutations")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.mutations")

Using RTCGA to download mutations data as included in RTCGA.mutations HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation Data, ExperimentData

Version 20151101.40.0

License GPL-2

Depends R (>= 3.2.0), RTCGA

Imports

System Requirements

URL

Bug Reports https://github.com/RTCGA/RTCGA/issues

Suggests knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me RTCGA

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.mutations_20151101.40.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/RTCGA.mutations

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.mutations

Package Short Url https://bioconductor.org/packages/RTCGA.mutations/

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