HiCDataHumanIMR90

This is the released version of HiCDataHumanIMR90; for the devel version, see HiCDataHumanIMR90.

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

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DOI: 10.18129/B9.bioc.HiCDataHumanIMR90

Bioconductor version: Release (3.22)

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Citation (from within R, enter citation("HiCDataHumanIMR90")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("HiCDataHumanIMR90")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")

HiC Data Human Fibroblast Dixon et al. 2012 PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, GEO, Genome, Homo_sapiens_Data

Version 1.30.0

License GPL-3

Depends R (>= 3.5.0)

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Suggests HiTC, BiocStyle

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Follow Installation instructions to use this package in your R session.

Source Package HiCDataHumanIMR90_1.30.0.tar.gz

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Source Repository git clone https://git.bioconductor.org/packages/HiCDataHumanIMR90

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataHumanIMR90

Package Short Url https://bioconductor.org/packages/HiCDataHumanIMR90/

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